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#variants

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beSpacific<p>How <a href="https://newsie.social/tags/RFKJr" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RFKJr</span></a> <a href="https://newsie.social/tags/mRNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>mRNA</span></a> crackdown affects <a href="https://newsie.social/tags/vaccine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>vaccine</span></a> making and future <a href="https://newsie.social/tags/pandemics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pandemics</span></a>. The <a href="https://newsie.social/tags/Trump" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Trump</span></a> administration is terminating <a href="https://newsie.social/tags/biodefense" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biodefense</span></a> <a href="https://newsie.social/tags/research" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>research</span></a> funding for mRNA projects, raising concerns about the nation’s ability to fight future <a href="https://newsie.social/tags/pandemics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pandemics</span></a>. <a href="https://newsie.social/tags/publichealth" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>publichealth</span></a> <a href="https://newsie.social/tags/medicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medicine</span></a> <a href="https://newsie.social/tags/healthcare" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthcare</span></a> <a href="https://newsie.social/tags/science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>science</span></a> <a href="https://newsie.social/tags/pathogens" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pathogens</span></a> <a href="https://newsie.social/tags/flu" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>flu</span></a> <a href="https://newsie.social/tags/birdflu" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>birdflu</span></a> <a href="https://newsie.social/tags/HHS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HHS</span></a> <a href="https://newsie.social/tags/taxpayers" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>taxpayers</span></a> <a href="https://newsie.social/tags/RNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RNA</span></a> <a href="https://newsie.social/tags/biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biology</span></a> <a href="https://newsie.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://www.washingtonpost.com/health/2025/08/06/rfk-jr-mrna-vaccine-criticism/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">washingtonpost.com/health/2025</span><span class="invisible">/08/06/rfk-jr-mrna-vaccine-criticism/</span></a></p>
sport of sacred spherical cows<p>Raj's dashboard, updated this morning, shows PQ.2 as standout child of Nimbus NB.1.8.1 / PQ; Stratus XFG overtaken by child XFG.2; and LP.8.1 long ago overshadowed by LP.8.1.1/ NY.</p><p>FDA vaccine target LP.8.1, dominant since March, plateaued in April. June saw Nimbus NB.1.8.1 / PQ, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.<br> <br><a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a>'s most recent Friday dataset, updated Tuesday June 24, showed Nimbus taking plurality, with Stratus XFG family also gaining share.</p><p>Despite notice of moving to "longer reporting periods", for reason of "low number of sequences being reported" (see dot-hatching in below chart reflecting"less reliable" data), now three-weeks old dataset was still for periods two-weeks each.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Raj's dashboard, last updated July 3, showed PQ.2 as standout child of Nimbus NB.1.8.1 / PQ; Stratus XFG in competition with kids XFG.2 and XFG.3; and LP.8.1 long ago overshadowed by LP.8.1.1/ NY.</p><p>FDA vaccine target LP.8.1, dominant since March, plateaued in April. June saw Nimbus NB.1.8.1 / PQ, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.<br> <br><a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a>'s most recent Friday dataset, updated Tuesday June 24, showed Nimbus taking plurality, with Stratus XFG family also gaining share.</p><p>Despite notice of moving to "longer reporting periods", for reason of "low number of sequences being reported" (see dot-hatching in below chart reflecting"less reliable" data), now three-weeks old dataset was still for periods two-weeks each.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>FDA vaccine target LP.8.1, dominant since March, plateaued in April. June saw Nimbus NB.1.8.1 / PQ, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.<br> <br><a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a>'s last Friday dataset, updated Tuesday this week, shows Nimbus taking plurality, with Stratus XFG family also gaining share. Despite notice of moving to "longer reporting periods", for reason of "low number of sequences being reported" (see dot-hatching in below chart reflecting"less reliable" data), current dataset was still for periods two-weeks each.</p><p>Raj's dashboard, updated Sunday, shows PQ.2 as standout child of Nimbus NB.1.8.1 / PQ; Stratus XFG in competition with kids XFG.2 and XFG.3; and LP.8.1 long ago overshadowed by LP.8.1.1/ NY.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>FDA vaccine target LP.8.1, dominant since March, plateaued in April. June saw Nimbus NB.1.8.1 / PQ, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.</p><p>Due to "low numbers of sequences being reported" (as evidenced by "less reliable" dot hatching on below chart), <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> did not publish data this week, having advised only of "moving to longer reporting periods":</p><p><a href="https://hcommons.social/@beadsland/114662142357659963" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">hcommons.social/@beadsland/114</span><span class="invisible">662142357659963</span></a><br> <br>Raj's dashboard, updated this morning, shows PQ.2 as standout child of Nimbus NB.1.8.1 / PQ; Stratus XFG in competition with kids XFG.2 and XFG.3; and LP.8.1 long ago overshadowed by LP.8.1.1/ NY.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>FDA vaccine target LP.8.1, dominant since March, plateaued in April. June sees Nimbus NB.1.8.1, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.</p><p><a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> added NB.1.8.1 only in latest, late-published public dataset. Notice of "software error" that heralded data delay… has been removed. Hatching for "less reliable" data reflects "low numbers of sequences being reported".<br> <br>Raj's dashboard, updated this morning, shows Nimbus diversifying in May. Also, XFJ significant, even if CDC hasn't broken out.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Two weeks ago, Mike Honey noted that there are three recombinants that have arrived on Doppelgänger spike proteins, namely XFJ, XFM, and XFP:</p><p><a href="https://aus.social/@mike_honey_/114611686572899925" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">aus.social/@mike_honey_/114611</span><span class="invisible">686572899925</span></a></p><p>Last week, Xu Zhu (HT D. Focosi) identified a superset of recombinants that have all arrived at a pairing of LF.7's NTD with RBD from elsewhere, namely: XFC, XFG, XFH, XFJ, XFM, XFN and XFP:</p><p><a href="https://x.com/dfocosi/status/1931351676880879856" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">x.com/dfocosi/status/193135167</span><span class="invisible">6880879856</span></a></p><p>Above variants chart <a href="https://hcommons.social/tags/AnnoPlot" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AnnoPlot</span></a> script is now updated to favor grouping by such emerging clusters preferentially over grouping by legacy ancestors.</p><p>As a reminder, recombinants happen when more than one virus strain is actively replicating in the same organism.</p><p>Here, that means two simultaneous infections, from different sources, finding a home in the same person. </p><p>When <a href="https://hcommons.social/tags/PublicHealth" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PublicHealth</span></a> is a priority, this should be a rare occurrence.</p><p>There are seven unique recombinants identified in this new cluster, alone.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>FDA vaccine target LP.8.1, dominant since March, plateaued in April. June sees Nimbus NB.1.8.1, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.</p><p><a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> adds NB.1.8.1 only in latest, late-published public dataset. "Software error" that heralded data delay remains unresolved. Hatching for "less reliable" data reflects "low numbers of sequences being reported".<br> <br>Raj's dashboard, updated Sunday, shows Nimbus diversifying in May.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Since March, LP.8.1 has been dominant. FDA designates same as vaccine target, on very week its share has plateaued.<br> <br>Data collection continues to be low priority nationally—as exactly zero regions have enough data for CDC to plot.</p><p>No new variants broken out by <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a>, although the "razor blade throat" variant, NB.1.8.1, remains significant in GISAID.</p><p>Raj's dashboard was last updated yesterday.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
Steve<p>⚠️⚠️ <a href="https://universeodon.com/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> ⚠️⚠️<br><a href="https://universeodon.com/tags/Variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Variants</span></a> 🔎 <a href="https://universeodon.com/tags/SummerWave" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SummerWave</span></a><br>🔎 <a href="https://universeodon.com/tags/Covid19UK" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19UK</span></a> 🔎 <a href="https://universeodon.com/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> 🔎</p><p><a href="https://open.substack.com/pub/christinapagel/p/latest-covid-variants-and-outlook" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">open.substack.com/pub/christin</span><span class="invisible">apagel/p/latest-covid-variants-and-outlook</span></a></p>
sport of sacred spherical cows<p>Updated <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> estimates show we'd pretty much been in a JN.1.11 soup since Dec, until late March, when LP.8.1 took majority.</p><p>Data collection continues to be low priority nationally—as exactly zero regions have enough data for CDC to plot.</p><p>CDC breaks out recombinant XFC from FLiRT parent LF.7 . (Our dataviz now identifies parentage for each recombinant.) Raj's dashboard was last updated today.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Updated <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> estimates show we'd pretty much been in a JN.1.11 soup since Dec, until late March, when LP.8.1 took majority.</p><p>Data collection continues to be a low priority nationally, as exactly zero regions have enough data for CDC to plot.</p><p>Two children of LF.7.7, dot1 and dot2, broken out by CDC, together with PA.1, a grandchild of MC.10.</p><p>Raj's dashboard was last updated a week ago today.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Updated <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> estimates show we've pretty much been in a JN.1.11 soup since Dec, until late March, when LP.8.1 took majority.</p><p>Data collection continues to be a low priority nationally, as exactly zero regions have enough data for CDC to plot.</p><p>No new variants broken out, yet CDC seems to have resources to tailor their color key: <a href="https://hcommons.social/@beadsland/114163320179234281" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">hcommons.social/@beadsland/114</span><span class="invisible">163320179234281</span></a></p><p>Raj's dashboard was updated on today.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Updated <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> estimates show we've pretty much been in a JN.1.11 soup since Dec, until late March, when LP.8.1 took majority.</p><p>Data collection continues to be a low priority nationally, as only one region (NY/NJ) has enough data for CDC to plot.</p><p>No new variants broken out, yet CDC seems to have resources to tailor their color key: <a href="https://hcommons.social/@beadsland/114163320179234281" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">hcommons.social/@beadsland/114</span><span class="invisible">163320179234281</span></a></p><p>Raj's dashboard was updated on Sunday.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Second time <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> has reported estimates for more than two regions at a time since October.</p><p>To be clear, national data used for chart above are modeled on regional data collection.</p><p>LP.8.1 now estimated at majority in Great Lakes, nearing majority in NY/NJ and Mid-Atlantic.</p><p>XEC (incl. XEC.4) still around a quarter share in all three regions.</p><p>[For color key, see: <a href="https://covid.cdc.gov/covid-data-tracker/#variant-proportions" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">covid.cdc.gov/covid-data-track</span><span class="invisible">er/#variant-proportions</span></a>]</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/WearAMask" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>WearAMask</span></a> <a href="https://hcommons.social/tags/BetterMasks" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BetterMasks</span></a></p>
sport of sacred spherical cows<p>A FLuQE wavelet opened September, cresting as KP.3.1.1 / MC wave into November. FDA's second-guess vaccine target, KP.2, dropped out in December. Updated <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> estimates indicate we've been in a JN.1.11 soup pretty much since then. </p><p>No new variants broken out by CDC, as KP.1.1.3 / LP descendant LP.8.1 approaches majority.</p><p>No recent GISAID data—as Raj's dashboard hasn't updated in near a month.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Updated GISAID data early-mid January has FluQE31 KP.3.1.1 / MC and children down to under a third of all sequences.</p><p>FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC now over two fifths.</p><p>JN.1 FLiRT descendant LF.7 is diversifying, while LP.8.1.1 / NY, MC.8.1, and XEQ (recombinant of FLiRT KS.1.1.2 and KP.3) all stand out.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a></p>
sport of sacred spherical cows<p>A FLuQE wavelet opened September, becoming MC wave into November. December saw both FLiRT clans and JN.1.11 vie for dominance, only for JN.1 FLiRT to win out.</p><p>Although <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> did update metadata today, data remains unchanged from two weeks ago.</p><p>At that time, FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC family—never having reached majority—was being pressed by FLiRT LP.8.1.</p><p>New GISAID data from Raj.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
sport of sacred spherical cows<p>Updated GISAID data entering January has FluQE31 KP.3.1.1 / MC and children down to just over a third of all sequences.</p><p>FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC now approaching two fifths.</p><p>JN.1 FLiRT descendant LF.7 is diversifying, while KP.1.1.3 / LP scion LP.8.1, and recombinant XEL—child of JN.1 and FLiRT KS.1.1.2—both stand out.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a></p>
sport of sacred spherical cows<p>A FLuQE wavelet opened September, becoming MC wave into November. December saw both FLiRT clans and JN.1.11 vie for dominance, only for JN.1 FLiRT to win out.</p><p>After skipping update two weeks prior, <a href="https://hcommons.social/tags/CDC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CDC</span></a> broke out XEC.4, as FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC family—never having reached majority—being pressed by FLiRT LP.8.1.</p><p>New dashboard from Raj givs us more recent GISAID data.</p><p>❖ <a href="https://hcommons.social/tags/ThisIsOurPolio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ThisIsOurPolio</span></a> <a href="https://hcommons.social/tags/Covid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid</span></a> <a href="https://hcommons.social/tags/Covid19" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Covid19</span></a> <a href="https://hcommons.social/tags/SARS2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SARS2</span></a> <a href="https://hcommons.social/tags/variants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variants</span></a> <a href="https://hcommons.social/tags/CovidIsNotOver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsNotOver</span></a> <a href="https://hcommons.social/tags/CovidIsAirborne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CovidIsAirborne</span></a> <a href="https://hcommons.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataviz</span></a> <a href="https://hcommons.social/tags/datavis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>datavis</span></a></p>
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