Replied in thread
Since March, LP.8.1 has been dominant. FDA designates same as vaccine target, on very week its share has plateaued.
Data collection continues to be low priority nationally—as exactly zero regions have enough data for CDC to plot.
No new variants broken out by #CDC, although the "razor blade throat" variant, NB.1.8.1, remains significant in GISAID.
Raj's dashboard was last updated yesterday.
❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne #dataviz #datavis
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/11–5/24. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
For 4/27–5/10, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
73% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
JN.1 + FLiRT-LF [browns]:
10% - XFC
3% - LF.7.7.2
2% - XFG.2†, XFG†, LF.7.9† & other LF.7
1% - LF.7.7.1 & LF.7.2.1 / PC
WHO-Vaccine-Target JN.1 [red]:
6% - XEC, LB.1.3.1 / NL, XEC.4, XEC.4.1† & XFJ†
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
¾% - KP.3 & XEQ
⅞% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
¼% - XEK
Other [greys]:
0% - Razor-Blade-Throat NB.1.8.1 / PQ† & other WHO-Vaccine-Target JN.1
0% - Other (not specified)
_____
XEC is a child of FLiRT cluster KS.1.1 and FLuQE cluster KP.3.3.
XEK is a child of FLiRT31 cluster KP.2.3 and recombinant XEC.
XEQ is a child of FLiRT cluster KS.1.1.2 and FLuQE cluster KP.3.
XFC is a child of FLiRT31 cluster LP.8.1.1 and JN.1.16.1 scion LF.7.
XFG is a child of FLiRT31 cluster LP.8.1.2 and JN.1.16.1 scion LF.7.
[Add'l footnotes omitted.]](https://spaces.hcommons.social/media_attachments/files/114/582/113/385/770/718/original/5596d4047c6944a2.jpg "Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/11–5/24. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
For 4/27–5/10, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
73% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
JN.1 + FLiRT-LF [browns]:
10% - XFC
3% - LF.7.7.2
2% - XFG.2†, XFG†, LF.7.9† & other LF.7
1% - LF.7.7.1 & LF.7.2.1 / PC
WHO-Vaccine-Target JN.1 [red]:
6% - XEC, LB.1.3.1 / NL, XEC.4, XEC.4.1† & XFJ†
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
¾% - KP.3 & XEQ
⅞% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
¼% - XEK
Other [greys]:
0% - Razor-Blade-Throat NB.1.8.1 / PQ† & other WHO-Vaccine-Target JN.1
0% - Other (not specified)
_____
XEC is a child of FLiRT cluster KS.1.1 and FLuQE cluster KP.3.3.
XEK is a child of FLiRT31 cluster KP.2.3 and recombinant XEC.
XEQ is a child of FLiRT cluster KS.1.1.2 and FLuQE cluster KP.3.
XFC is a child of FLiRT31 cluster LP.8.1.1 and JN.1.16.1 scion LF.7.
XFG is a child of FLiRT31 cluster LP.8.1.2 and JN.1.16.1 scion LF.7.
[Add'l footnotes omitted.]")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 4/27–5/10. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
LP.8.1 accounts for over two thirds.
For 4/13–4/26, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
70% - LP.8.1.1 / NY†, LP.8.1.8† & other LP.8.1
JN.1 + FLiRT-LF [browns]:
9% - XFC
3% - LF.7.7.2
2% - XFG† & other LF.7
2% - LF.7.7.1 & LF.7.2.1 / PC
JN.1 + FLiRT [reds]:
2% - LB.1.3.1 / NL
1% - XEC.4
½% - XEQ
6% - other XEC
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
⅓% - KP.3
2% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
⅓% - XEK
Other [greys]:
⅐% - NB.1.8.1†, JN.1.16 & other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
_____
XEC is a child of FLiRT cluster KS.1.1 and FLuQE cluster KP.3.3.
XEK is a child of FLiRT31 cluster KP.2.3 and recombinant XEC.
XEQ is a child of FLiRT cluster KS.1.1.2 and FLuQE cluster KP.3.
XFC is a child of FLiRT31 cluster LP.8.1.1 and FLiRT cluster LF.7.
XFG is a child of FLiRT31 cluster LP.8.1.2 and FLiRT cluster LF.7.
[Add'l footnotes omitted.]](https://spaces.hcommons.social/media_attachments/files/114/491/756/859/809/463/original/6834a1b3b7cd3deb.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 4/27–5/10. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
LP.8.1 accounts for over two thirds.
For 4/13–4/26, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
70% - LP.8.1.1 / NY†, LP.8.1.8† & other LP.8.1
JN.1 + FLiRT-LF [browns]:
9% - XFC
3% - LF.7.7.2
2% - XFG† & other LF.7
2% - LF.7.7.1 & LF.7.2.1 / PC
JN.1 + FLiRT [reds]:
2% - LB.1.3.1 / NL
1% - XEC.4
½% - XEQ
6% - other XEC
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
⅓% - KP.3
2% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
⅓% - XEK
Other [greys]:
⅐% - NB.1.8.1†, JN.1.16 & other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
_____
XEC is a child of FLiRT cluster KS.1.1 and FLuQE cluster KP.3.3.
XEK is a child of FLiRT31 cluster KP.2.3 and recombinant XEC.
XEQ is a child of FLiRT cluster KS.1.1.2 and FLuQE cluster KP.3.
XFC is a child of FLiRT31 cluster LP.8.1.1 and FLiRT cluster LF.7.
XFG is a child of FLiRT31 cluster LP.8.1.2 and FLiRT cluster LF.7.
[Add'l footnotes omitted.]")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through April 13–26. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for over two thirds; JN.1 + FLiRT for near a quarter.
For fortnight of 3/30–4/12, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
69% - LP.8.1.1 / NY† & other LP.8.1
JN.1 + FLiRT-KS [browns]:
1% - XEC.4
¾% - XEQ
10% - other XEC
JN.1 + FLiRT [reds]:
6% - LF.7.7.2
4% - LF.7.7.1, LF.7 & LF.7.2.1 / PC
2% - LB.1.3.1 / NL
JN.1.11 [greens]:
3% - MC.10.1, MC.28.1 & MC.19
2% - PA.1
½% - KP.3
2% - MC.1 & other KP.3.1.1 / MC
XEK [blue]:
⅜% - XEK
Other [greys]:
⅙% - JN.1.16
⅒% - NB.1† & other WHO-Vaccine-Target JN.1
¼% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/410/379/035/209/452/original/9439ad7e47d8ab14.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through April 13–26. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for over two thirds; JN.1 + FLiRT for near a quarter.
For fortnight of 3/30–4/12, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
69% - LP.8.1.1 / NY† & other LP.8.1
JN.1 + FLiRT-KS [browns]:
1% - XEC.4
¾% - XEQ
10% - other XEC
JN.1 + FLiRT [reds]:
6% - LF.7.7.2
4% - LF.7.7.1, LF.7 & LF.7.2.1 / PC
2% - LB.1.3.1 / NL
JN.1.11 [greens]:
3% - MC.10.1, MC.28.1 & MC.19
2% - PA.1
½% - KP.3
2% - MC.1 & other KP.3.1.1 / MC
XEK [blue]:
⅜% - XEK
Other [greys]:
⅙% - JN.1.16
⅒% - NB.1† & other WHO-Vaccine-Target JN.1
¼% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Mar 30–Apr 12. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for over three fifths; JN.1 + FLiRT for near a quarter.
For fortnight of 3/16–3/29, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
64% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
2% - XEC.4
15% - other XEC
JN.1.11 + FLuQE [greens]:
5% - MC.10.1 & MC.19
1% - MC.28.1
2% - XEQ & other KP.3
3% - MC.1 & other KP.3.1.1 / MC
JN.1 + FLiRT [reds]:
4% - LF.7
2% - LB.1.3.1 / NL
¾% - LF.7.2.1 / PC
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3
Other [greys]:
⅓% - JN.1.16
⅒% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
† Dagger variant is not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/333/759/840/925/358/original/cfec2b797658b166.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Mar 30–Apr 12. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for over three fifths; JN.1 + FLiRT for near a quarter.
For fortnight of 3/16–3/29, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
64% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
2% - XEC.4
15% - other XEC
JN.1.11 + FLuQE [greens]:
5% - MC.10.1 & MC.19
1% - MC.28.1
2% - XEQ & other KP.3
3% - MC.1 & other KP.3.1.1 / MC
JN.1 + FLiRT [reds]:
4% - LF.7
2% - LB.1.3.1 / NL
¾% - LF.7.2.1 / PC
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3
Other [greys]:
⅓% - JN.1.16
⅒% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
† Dagger variant is not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through March 16–29. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for well over half; JN.1 + FLiRT for over a quarter.
For fortnight of 3/2–3/15, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
55% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
21% - XEC.2† & other XEC
2% - XEC.4
JN.1.11 + FLuQE [greens]:
6% - MC.10.1 & MC.19
3% - MC.28.1
2% - XEQ
4% - MC.1 & other KP.3.1.1 / MC
⅘% - other KP.3
JN.1 + FLiRT [reds]:
4% - LF.7
2% - LB.1.3.1 / NL
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
⅖% - JN.1.16
⅙% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/259/915/273/763/471/original/d43e9777e86ef6a8.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through March 16–29. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for well over half; JN.1 + FLiRT for over a quarter.
For fortnight of 3/2–3/15, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
55% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
21% - XEC.2† & other XEC
2% - XEC.4
JN.1.11 + FLuQE [greens]:
6% - MC.10.1 & MC.19
3% - MC.28.1
2% - XEQ
4% - MC.1 & other KP.3.1.1 / MC
⅘% - other KP.3
JN.1 + FLiRT [reds]:
4% - LF.7
2% - LB.1.3.1 / NL
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
⅖% - JN.1.16
⅙% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through March 2–15. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over three fifths; JN.1.11 + FLiRT for near half.
For fortnight of 1/19–2/1, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
47% - LP.8.1.1 / NY† & other LP.8.1
JN.1 + FLiRT-KS [browns]:
26% - XEC.2†, XEC.8† & other XEC
2% - XEC.4
2% - XEQ
⅒% - other KS.1
JN.1.11 [greens]:
¾% - KP.3
15% - MC.10.1, MC.28.1, MC.19, MC.1 & other KP.3.1.1 / MC
JN.1 + FLiRT [reds]:
4% - LF.7
3% - LB.1.3.1 / NL
0% - LB.1
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
½% - JN.1.16
⅐% - other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/163/035/799/833/179/original/9a1523ae932eddff.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through March 2–15. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over three fifths; JN.1.11 + FLiRT for near half.
For fortnight of 1/19–2/1, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
47% - LP.8.1.1 / NY† & other LP.8.1
JN.1 + FLiRT-KS [browns]:
26% - XEC.2†, XEC.8† & other XEC
2% - XEC.4
2% - XEQ
⅒% - other KS.1
JN.1.11 [greens]:
¾% - KP.3
15% - MC.10.1, MC.28.1, MC.19, MC.1 & other KP.3.1.1 / MC
JN.1 + FLiRT [reds]:
4% - LF.7
3% - LB.1.3.1 / NL
0% - LB.1
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
½% - JN.1.16
⅐% - other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Feb 16–Mar 1. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over three fifths; JN.1.11 + FLiRT for over two fifths.
For fortnight of 1/19–2/1, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
42% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
31% - XEC.2†, XEC.8† & other XEC
3% - XEC.4
JN.1.11 + FLuQE [greens]:
5% - MC.10.1 & MC.19
3% - MC.28.1
2% - XEQ
8% - MC.1 & other KP.3.1.1 / MC
½% - other KP.3
JN.1 + FLiRT [reds]:
3% - LF.7
2% - LB.1.3.1 / NL
⅛% - LB.1 & KS.1
JN.1.11 + FLiRT [blues]:
⅘% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
⅕% - other Pirola BA.2.86
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/083/804/704/370/103/original/2a0b5c49cb4fec7d.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Feb 16–Mar 1. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over three fifths; JN.1.11 + FLiRT for over two fifths.
For fortnight of 1/19–2/1, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
42% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
31% - XEC.2†, XEC.8† & other XEC
3% - XEC.4
JN.1.11 + FLuQE [greens]:
5% - MC.10.1 & MC.19
3% - MC.28.1
2% - XEQ
8% - MC.1 & other KP.3.1.1 / MC
½% - other KP.3
JN.1 + FLiRT [reds]:
3% - LF.7
2% - LB.1.3.1 / NL
⅛% - LB.1 & KS.1
JN.1.11 + FLiRT [blues]:
⅘% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
⅕% - other Pirola BA.2.86
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 2/16/2025 4:45:09 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 1/19/2025 to 2/1/2025. Top subvariants: XEC (24.06%), LP.8.1 (11.11%), LP.8.1.1 (9.8%), MC.10.1 (5.34%), MC.1 (4.23%), XEC.2 (4.09%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) for New York (59), Colorado (53), Minnesota (25), New Jersey, California, Illinois, Nebraska, Iowa, Pennsylvania, Virginia, Delaware, Rhode Island; LP.8.1 (yellow) for New York (43), California, Iowa, Colorado, Delaware; LP.8.1.1 (yellow) for New York (36), Illinois (33), Minnesota, California; XEC.8 (forest) for Nebraska (24); XEQ (aqua) for Colorado (23).
Many dozens of bubbles of varying sizes representing near a hundred variants across various states.
ALT-text by beadsland at ko-fi.](https://spaces.hcommons.social/media_attachments/files/114/027/937/263/011/661/original/ce98a54661c9c675.png "Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 2/16/2025 4:45:09 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 1/19/2025 to 2/1/2025. Top subvariants: XEC (24.06%), LP.8.1 (11.11%), LP.8.1.1 (9.8%), MC.10.1 (5.34%), MC.1 (4.23%), XEC.2 (4.09%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) for New York (59), Colorado (53), Minnesota (25), New Jersey, California, Illinois, Nebraska, Iowa, Pennsylvania, Virginia, Delaware, Rhode Island; LP.8.1 (yellow) for New York (43), California, Iowa, Colorado, Delaware; LP.8.1.1 (yellow) for New York (36), Illinois (33), Minnesota, California; XEC.8 (forest) for Nebraska (24); XEQ (aqua) for Colorado (23).
Many dozens of bubbles of varying sizes representing near a hundred variants across various states.
ALT-text by beadsland at ko-fi.")
![Chart: Variants by Pango-Designated Lineage: U.S. Jan 19 to Feb 1
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated Feb 16)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest "Estimated Variant Proportions by Common Name" (earlier in this thread), namely:
• Browns: JN.1.11 + FLiRT
• Greens: JN.1.11 + FLuQE
• Reds: XEC
• Purple: JN.1 + FLiRT-KS
• Blues: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Multiple unlabeled slivers of grey and tan brown.
4.0% - KP.3.1.1 / MC [green]
- Unlabeled slice green.
1.9% - LB.1.3.1 (1 variant) [green]
- Unlbl. sliver of grey.
4.8% - LF.7 (8 variants) [blue]
9.8% - LP.8.1.1 (1 variant) [brown]
11.7% - LP.8.1 (2 variants) [brown]
- Unlbl. sliver tan.
5.7% - MC.1 (4 variants) [green]
Unlbl. sliver green.
5.3% - MC.10.1 (1 variant) [green]
- Two unlbl. slices green.
4.3% - other MC (17 variants) [green]
- Unlbl. slice grey.
2.3% - NL (4 variants) [blue]
1.2% - NC, NF, NB, NA, … [grey]
6.1% - XEC.2 (4 variants) [red]
1.8% - XEC.4 (1 variant) [pink red]
3.1% - XEC.8 (1 variant) [red]
28.9% - other XEC (12 variants) [red]
- Unlbl. slice tan.
2.4% - XEQ (1 variant) [grey]
- Unlbl. sliver grey.](https://spaces.hcommons.social/media_attachments/files/114/027/937/672/463/754/original/d0f6d8837778dfe7.png "Chart: Variants by Pango-Designated Lineage: U.S. Jan 19 to Feb 1
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated Feb 16)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest \"Estimated Variant Proportions by Common Name\" (earlier in this thread), namely:
• Browns: JN.1.11 + FLiRT
• Greens: JN.1.11 + FLuQE
• Reds: XEC
• Purple: JN.1 + FLiRT-KS
• Blues: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Multiple unlabeled slivers of grey and tan brown.
4.0% - KP.3.1.1 / MC [green]
- Unlabeled slice green.
1.9% - LB.1.3.1 (1 variant) [green]
- Unlbl. sliver of grey.
4.8% - LF.7 (8 variants) [blue]
9.8% - LP.8.1.1 (1 variant) [brown]
11.7% - LP.8.1 (2 variants) [brown]
- Unlbl. sliver tan.
5.7% - MC.1 (4 variants) [green]
Unlbl. sliver green.
5.3% - MC.10.1 (1 variant) [green]
- Two unlbl. slices green.
4.3% - other MC (17 variants) [green]
- Unlbl. slice grey.
2.3% - NL (4 variants) [blue]
1.2% - NC, NF, NB, NA, … [grey]
6.1% - XEC.2 (4 variants) [red]
1.8% - XEC.4 (1 variant) [pink red]
3.1% - XEC.8 (1 variant) [red]
28.9% - other XEC (12 variants) [red]
- Unlbl. slice tan.
2.4% - XEQ (1 variant) [grey]
- Unlbl. sliver grey.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through February 2–15. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over half; JN.1 + FLiRT for near half.
For fortnight of 1/19–2/1, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [reds]:
37% - XEC.2†, XEC.8† & other XEC
4% - XEC.4
JN.1.11 + FLiRT [browns]:
31% - LP.8.1.1 / NY† & other LP.8.1
1% - XEK
⅒% - KP.2.3, FDA-Vaccine-Target KP.2 & KP.1.1.3 / LP
JN.1.11 + FLuQE [greens]:
3% - XEQ
17% - MC.10.1, MC.1, MC.19 & other KP.3.1.1 / MC
⅗% - other KP.3
JN.1 + FLiRT [blues]:
3% - LF.7
2% - LB.1.3.1 / NL
0% - LB.1
JN.1 + FLiRT-KS [purple]:
⅒% - other KS.1
Other [greys]:
½% - JN.1.16
⅓% - other Pirola BA.2.86
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/027/716/813/926/890/original/6403b3cd89efd3c3.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through February 2–15. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over half; JN.1 + FLiRT for near half.
For fortnight of 1/19–2/1, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [reds]:
37% - XEC.2†, XEC.8† & other XEC
4% - XEC.4
JN.1.11 + FLiRT [browns]:
31% - LP.8.1.1 / NY† & other LP.8.1
1% - XEK
⅒% - KP.2.3, FDA-Vaccine-Target KP.2 & KP.1.1.3 / LP
JN.1.11 + FLuQE [greens]:
3% - XEQ
17% - MC.10.1, MC.1, MC.19 & other KP.3.1.1 / MC
⅗% - other KP.3
JN.1 + FLiRT [blues]:
3% - LF.7
2% - LB.1.3.1 / NL
0% - LB.1
JN.1 + FLiRT-KS [purple]:
⅒% - other KS.1
Other [greys]:
½% - JN.1.16
⅓% - other Pirola BA.2.86
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through February 2–15. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over half; JN.1 + FLiRT for near half.
For fortnight of 1/5–1/18, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [reds]:
37% - XEC.2† & other XEC
4% - XEC.4
JN.1.11 + FLiRT [browns]:
31% - LP.8.1.1 / NY† & other LP.8.1
1% - XEK
⅒% - KP.2.3, FDA-Vaccine-Target KP.2 & KP.1.1.3 / LP
JN.1.11 + FLuQE [greens]:
17% - MC.10.1, MC.1, MC.19, MC.8.1† & other KP.3.1.1 / MC
3% - XEQ
⅗% - other KP.3
JN.1 + FLiRT [blues]:
3% - LF.7
2% - LB.1.3.1 / NL
0% - LB.1
JN.1 + FLiRT-KS [purple]:
⅒% - other KS.1
Other [greys]:
½% - JN.1.16
⅓% - other Pirola BA.2.86
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/004/692/397/171/374/original/12689f349ea5c8c6.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through February 2–15. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1.11 accounts for over half; JN.1 + FLiRT for near half.
For fortnight of 1/5–1/18, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [reds]:
37% - XEC.2† & other XEC
4% - XEC.4
JN.1.11 + FLiRT [browns]:
31% - LP.8.1.1 / NY† & other LP.8.1
1% - XEK
⅒% - KP.2.3, FDA-Vaccine-Target KP.2 & KP.1.1.3 / LP
JN.1.11 + FLuQE [greens]:
17% - MC.10.1, MC.1, MC.19, MC.8.1† & other KP.3.1.1 / MC
3% - XEQ
⅗% - other KP.3
JN.1 + FLiRT [blues]:
3% - LF.7
2% - LB.1.3.1 / NL
0% - LB.1
JN.1 + FLiRT-KS [purple]:
⅒% - other KS.1
Other [greys]:
½% - JN.1.16
⅓% - other Pirola BA.2.86
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 1/31/2025 6:43:47 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 1/5/2025 to 1/18/2025. Top subvariants: XEC (26.32%), KP.3.1.1 (8.61%), LP.8.1 (5.74%), XEC.2 (4.23%), MC.10.1 (4.18%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) in Ohio (171), New York (85), Colorado (58), Minnesota (46), New Jersey, Iowa, Utah; KP.3.1.1 (violet) for Ohio (58), Minnesota, New York; MC.8.1 (violet) for Ohio (51); XEQ (aqua) for Colorado (34); LP.8.1 (yellow) for New York, Ohio.
Many dozens of bubbles of varying sizes representing over a hundred variants across various states.
ALT-text by beadsland at ko-fi.](https://spaces.hcommons.social/media_attachments/files/113/925/598/052/682/439/original/4b72cd6231c464fe.png "Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 1/31/2025 6:43:47 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 1/5/2025 to 1/18/2025. Top subvariants: XEC (26.32%), KP.3.1.1 (8.61%), LP.8.1 (5.74%), XEC.2 (4.23%), MC.10.1 (4.18%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) in Ohio (171), New York (85), Colorado (58), Minnesota (46), New Jersey, Iowa, Utah; KP.3.1.1 (violet) for Ohio (58), Minnesota, New York; MC.8.1 (violet) for Ohio (51); XEQ (aqua) for Colorado (34); LP.8.1 (yellow) for New York, Ohio.
Many dozens of bubbles of varying sizes representing over a hundred variants across various states.
ALT-text by beadsland at ko-fi.")
![Chart: Variants by Pango-Designated Lineage: U.S. Jan 5 to 18
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated Jan 31)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest "Estimated Variant Proportions by Common Name" (earlier in this thread), namely:
• Purples: JN.1.11
• Reds/Pinks: JN.1.11 + FLiRT
• Browns: JN.1.11 + FLiRT-LP
• Blues: XEC
• Greens: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Multiple unlabeled slivers of grey and pink.
8.6% - KP.3.1.1 / MC [purple]
- Unlabeled purple sliver & grey sliver
2.2% - LB.1.3.1 (1 var) [green]
- Unlabeled green sliver
3.4% - LF.7 (10 variants) [green]
3.9% - LP.8.1.1 (1 var) [brown]
5.9% - LP.8.1 (2 variants) [brown]
- Unlabeled brown and grey silvers
5.2% - MC.1 (5 variants) [purple]
3.4% - MC.8.1 (2 variants) [purple]
4.2% - MC.10.1 (1 var) [purple]
- Two unlabeled purple slices
8.5% - other MC (22 variants) [purple]
- Unlabeled grey slice
1.4% - NL (4 variants) [green]
- Unlabeled grey slice
5.7% - XEC.2 (5 variants) [blue]
2.0% - XEC.2 (1 var) [blue]
34% - other XEC (10 variants) [blue]
1.6% - XEK (4 variants) [red orange]
3.0% - XEQ (1 var) [grey]
- Unlabeled grey slice](https://spaces.hcommons.social/media_attachments/files/113/925/598/461/876/410/original/409a1e8fa79e0fd6.png "Chart: Variants by Pango-Designated Lineage: U.S. Jan 5 to 18
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated Jan 31)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest \"Estimated Variant Proportions by Common Name\" (earlier in this thread), namely:
• Purples: JN.1.11
• Reds/Pinks: JN.1.11 + FLiRT
• Browns: JN.1.11 + FLiRT-LP
• Blues: XEC
• Greens: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Multiple unlabeled slivers of grey and pink.
8.6% - KP.3.1.1 / MC [purple]
- Unlabeled purple sliver & grey sliver
2.2% - LB.1.3.1 (1 var) [green]
- Unlabeled green sliver
3.4% - LF.7 (10 variants) [green]
3.9% - LP.8.1.1 (1 var) [brown]
5.9% - LP.8.1 (2 variants) [brown]
- Unlabeled brown and grey silvers
5.2% - MC.1 (5 variants) [purple]
3.4% - MC.8.1 (2 variants) [purple]
4.2% - MC.10.1 (1 var) [purple]
- Two unlabeled purple slices
8.5% - other MC (22 variants) [purple]
- Unlabeled grey slice
1.4% - NL (4 variants) [green]
- Unlabeled grey slice
5.7% - XEC.2 (5 variants) [blue]
2.0% - XEC.2 (1 var) [blue]
34% - other XEC (10 variants) [blue]
1.6% - XEK (4 variants) [red orange]
3.0% - XEQ (1 var) [grey]
- Unlabeled grey slice")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through January 5–18. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1 + FLiRT accounts for well over half; XEC for near half.
For fortnight of 1/5–1/18, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [blues]:
47% - XEC.2† & other XEC
3% - XEC.4
JN.1.11 [purples]:
23% - MC.10.1, MC.1, MC.19, MC.8.1† & other KP.3.1.1 / MC
1% - KP.3 & XEQ†
JN.1.11 + FLiRT-LP [browns]:
15% - LP.8.1.1 / NY† & other LP.8.1
⅛% - LP.1 & other KP.1.1.3 / LP
JN.1 + FLiRT [greens]:
4% - LF.7
2% - LB.1.3.1 / NL
1% - JN.1.18.6 / LY
⅒% - LB.1
JN.1.11 + FLiRT [reds]:
4% - XEK
⅒% - FDA-Vaccine-Target KP.2
⅑% - other KP.2.3
Other [greys]:
⅒% - other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/113/925/353/197/745/222/original/94093d6ec2405a9c.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through January 5–18. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1 + FLiRT accounts for well over half; XEC for near half.
For fortnight of 1/5–1/18, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [blues]:
47% - XEC.2† & other XEC
3% - XEC.4
JN.1.11 [purples]:
23% - MC.10.1, MC.1, MC.19, MC.8.1† & other KP.3.1.1 / MC
1% - KP.3 & XEQ†
JN.1.11 + FLiRT-LP [browns]:
15% - LP.8.1.1 / NY† & other LP.8.1
⅛% - LP.1 & other KP.1.1.3 / LP
JN.1 + FLiRT [greens]:
4% - LF.7
2% - LB.1.3.1 / NL
1% - JN.1.18.6 / LY
⅒% - LB.1
JN.1.11 + FLiRT [reds]:
4% - XEK
⅒% - FDA-Vaccine-Target KP.2
⅑% - other KP.2.3
Other [greys]:
⅒% - other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 1/20/2025 6:14:21 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 12/22/2024 to 1/4/2025. Top subvariants: XEC (30.71%), KP.3.1.1 (16.45%), LP.8.1 (8.11%), XEC.2 (4.60%), MC.10.1 (4.08%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) in Minnesota (83), Colorado (66), Ohio (65), New York (53), Utah (40), New Jersey (35), Nebraska (30), Pennsylvania, California, Arizona, Iowa, Illinois; KP.3.1.1 (violet) for Minnesota (52), Ohio (35), Colorado (29), California, New York, Iowa, Nebraska; LP.8.1 (yellow) for Minnesota, New York, California; XEC.2 (forest) for New York.
Dozens of bubbles of varying sizes representing a many dozens of variants across various states.
ALT-text by beadsland at ko-fi.](https://spaces.hcommons.social/media_attachments/files/113/871/405/556/703/116/original/9f948a436f03b135.png "Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 1/20/2025 6:14:21 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 12/22/2024 to 1/4/2025. Top subvariants: XEC (30.71%), KP.3.1.1 (16.45%), LP.8.1 (8.11%), XEC.2 (4.60%), MC.10.1 (4.08%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) in Minnesota (83), Colorado (66), Ohio (65), New York (53), Utah (40), New Jersey (35), Nebraska (30), Pennsylvania, California, Arizona, Iowa, Illinois; KP.3.1.1 (violet) for Minnesota (52), Ohio (35), Colorado (29), California, New York, Iowa, Nebraska; LP.8.1 (yellow) for Minnesota, New York, California; XEC.2 (forest) for New York.
Dozens of bubbles of varying sizes representing a many dozens of variants across various states.
ALT-text by beadsland at ko-fi.")
![Chart: Variants by Pango-Designated Lineage: U.S. Dec 22 to Jan 4
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated January 20)
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Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest "Estimated Variant Proportions by Common Name" (earlier in this thread), namely:
• Purples: JN.1.11
• Reds/Pinks: JN.1.11 + FLiRT
• Browns: JN.1.11 + FLiRT-LP
• Blues: XEC
• Greens: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Mult. unlabeled slivers of grey & pink.
16.4% - KP.3.1.1 / MC [purple]
3.0% - other KP.3 (9 variants) [pink]
- Unlabeled sliver of grey.
2.2% - LB.1.3.1 (1 var.) [green]
- Unlabeled sliver of green.
4.0% - LF.7 (7 variants) [green]
8.1% - LP.8.1 (1 var.) [brown]
- Unlabeled slivers of brown, green, grey.
3.5% - MC.1 (2 variants) [purple]
4.1% - MC.10.1 (1 var.) [purple]
- Unlabeled sliver of purple.
1.4% - MC.19 (1 var.) [purple]
7.5% - other MC (19 variants) [purple]
- Unlabeled slice of grey.
2.4% - NL (6 variants) [green]
- Unlabeled slice of grey.
4.6% - XEC.2 (1 var.) [blue]
- Unlabeled slice of blue.
32.2% - other XEC (5 variants) [blue]
- Unlabeled slice of pink.
2.2% - XEL (1 var.) [grey]
- Unlabeled slice of grey](https://spaces.hcommons.social/media_attachments/files/113/871/406/386/336/746/original/68c398d78fe1b42a.png "Chart: Variants by Pango-Designated Lineage: U.S. Dec 22 to Jan 4
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated January 20)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest \"Estimated Variant Proportions by Common Name\" (earlier in this thread), namely:
• Purples: JN.1.11
• Reds/Pinks: JN.1.11 + FLiRT
• Browns: JN.1.11 + FLiRT-LP
• Blues: XEC
• Greens: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Mult. unlabeled slivers of grey & pink.
16.4% - KP.3.1.1 / MC [purple]
3.0% - other KP.3 (9 variants) [pink]
- Unlabeled sliver of grey.
2.2% - LB.1.3.1 (1 var.) [green]
- Unlabeled sliver of green.
4.0% - LF.7 (7 variants) [green]
8.1% - LP.8.1 (1 var.) [brown]
- Unlabeled slivers of brown, green, grey.
3.5% - MC.1 (2 variants) [purple]
4.1% - MC.10.1 (1 var.) [purple]
- Unlabeled sliver of purple.
1.4% - MC.19 (1 var.) [purple]
7.5% - other MC (19 variants) [purple]
- Unlabeled slice of grey.
2.4% - NL (6 variants) [green]
- Unlabeled slice of grey.
4.6% - XEC.2 (1 var.) [blue]
- Unlabeled slice of blue.
32.2% - other XEC (5 variants) [blue]
- Unlabeled slice of pink.
2.2% - XEL (1 var.) [grey]
- Unlabeled slice of grey")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through January 5–18. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1 + FLiRT accounts for well over half; XEC for near half.
For fortnight of 12/22–1/4, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [blues]:
47% - XEC.2† & other XEC
3% - XEC.4
JN.1.11 [purples]:
1% - KP.3
23% - MC.10.1, MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT-LP [browns]:
15% - LP.8.1
⅛% - LP.1 & other KP.1.1.3 / LP
JN.1 + FLiRT [greens]:
4% - LF.7
2% - LB.1.3.1 / NL
1% - JN.1.18.6 / LY
⅒% - LB.1
JN.1.11 + FLiRT [reds]:
4% - XEK
⅒% - FDA-Vaccine-Target KP.2
⅑% - other KP.2.3
Other [greys]:
⅒% - other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
† Dagger variant is not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/113/871/149/086/456/148/original/ab960ae7a01a0789.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through January 5–18. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. JN.1 + FLiRT accounts for well over half; XEC for near half.
For fortnight of 12/22–1/4, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
XEC [blues]:
47% - XEC.2† & other XEC
3% - XEC.4
JN.1.11 [purples]:
1% - KP.3
23% - MC.10.1, MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT-LP [browns]:
15% - LP.8.1
⅛% - LP.1 & other KP.1.1.3 / LP
JN.1 + FLiRT [greens]:
4% - LF.7
2% - LB.1.3.1 / NL
1% - JN.1.18.6 / LY
⅒% - LB.1
JN.1.11 + FLiRT [reds]:
4% - XEK
⅒% - FDA-Vaccine-Target KP.2
⅑% - other KP.2.3
Other [greys]:
⅒% - other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
† Dagger variant is not broken out by CDC, yet represent a significant share of recent GISAID sequences.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
A reskin of CDC's Variants Nowcast, emphasizing significant variants, incl. those in GISAID yet not broken out by CDC.
Five rectangular tree-charts, side by side, for fortnights through December 8–11. Legend organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all JN.1. XEC accounts for near half total, with JN.1.11 + FLuQE a bit more than a third.
For week of 11/24–12/7, packed bubble charts fill many single-variant tiles, indicating diversification of those variants—per GISAID—that wouldn't otherwise be apparent given CDC's choices of what to break out or not.
Legend:
XEC [purple]:
45% - XEC.2† & other XEC
JN.1.11 + FLuQE31-MC [browns]:
9% - MC.1, MC.10.1 & MC.19
24% - other KP.3.1.1 / MC
JN.1.11 + FLiRT [blues]:
8% - LP.8.1
4% - XEK
⅕% - FDA-Vaccine-Target KP.2, KP.4.1, KP.1.1 & KP.2.15
¼% - LP.1 & other KP.1.1.3 / LP
⅖% - other KP.2.3
JN.1 + FLiRT [greens]:
4% - LF.7
⅓% - JN.1.18.6 / LY
⅛% - LF.3.1, JN.1.16.1 / LF & KS.1
3% - LB.1.3.1 / NL & other LB.1
JN.1.11 + FLuQE [red]:
2% - KP.3
Other [greys]:
⅗% - JN.1.16, XEL†, five tracked variants at <⅒% & other WHO-Vaccine-Target JN.1
½% - Omicron-2 BA.2, Omicron B.1.1.529 / BA & Other (not specified)](https://spaces.hcommons.social/media_attachments/files/113/737/841/614/403/731/original/cb96157b43502443.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
A reskin of CDC's Variants Nowcast, emphasizing significant variants, incl. those in GISAID yet not broken out by CDC.
Five rectangular tree-charts, side by side, for fortnights through December 8–11. Legend organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all JN.1. XEC accounts for near half total, with JN.1.11 + FLuQE a bit more than a third.
For week of 11/24–12/7, packed bubble charts fill many single-variant tiles, indicating diversification of those variants—per GISAID—that wouldn't otherwise be apparent given CDC's choices of what to break out or not.
Legend:
XEC [purple]:
45% - XEC.2† & other XEC
JN.1.11 + FLuQE31-MC [browns]:
9% - MC.1, MC.10.1 & MC.19
24% - other KP.3.1.1 / MC
JN.1.11 + FLiRT [blues]:
8% - LP.8.1
4% - XEK
⅕% - FDA-Vaccine-Target KP.2, KP.4.1, KP.1.1 & KP.2.15
¼% - LP.1 & other KP.1.1.3 / LP
⅖% - other KP.2.3
JN.1 + FLiRT [greens]:
4% - LF.7
⅓% - JN.1.18.6 / LY
⅛% - LF.3.1, JN.1.16.1 / LF & KS.1
3% - LB.1.3.1 / NL & other LB.1
JN.1.11 + FLuQE [red]:
2% - KP.3
Other [greys]:
⅗% - JN.1.16, XEL†, five tracked variants at <⅒% & other WHO-Vaccine-Target JN.1
½% - Omicron-2 BA.2, Omicron B.1.1.529 / BA & Other (not specified)")
![Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 12/23/2024 6:51:01 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 11/24/2024 to 12/7/2024. Top subvariants: XEC (28.39%), KP.3.1.1 (22.71%), KP.3.1 (4.95%), LP.8.1 (3.57%) and XEL (3.41%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two Pirola strains), blue (BA.2.75.*), gold (BA.4.*), and grey (other), although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for XEC for Colorado (103), New York (43), Utah (33), Minnesota, California, a South state, Delaware, Arizona, Nevada; KP.3.1 for Colorado (60); KP.3.1.1 for New York (50), Colorado (32), California (32), Utah (27), Minnesota, Utah, Illinois, Texas.
Dozens of bubbles of varying sizes representing a few dozen of variants across various states.
ALT-text by beadsland at ko-fi.](https://spaces.hcommons.social/media_attachments/files/113/711/594/967/896/965/original/61be34e5acef55d5.png "Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 12/23/2024 6:51:01 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 11/24/2024 to 12/7/2024. Top subvariants: XEC (28.39%), KP.3.1.1 (22.71%), KP.3.1 (4.95%), LP.8.1 (3.57%) and XEL (3.41%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two Pirola strains), blue (BA.2.75.*), gold (BA.4.*), and grey (other), although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for XEC for Colorado (103), New York (43), Utah (33), Minnesota, California, a South state, Delaware, Arizona, Nevada; KP.3.1 for Colorado (60); KP.3.1.1 for New York (50), Colorado (32), California (32), Utah (27), Minnesota, Utah, Illinois, Texas.
Dozens of bubbles of varying sizes representing a few dozen of variants across various states.
ALT-text by beadsland at ko-fi.")
![Chart: Variants by Pango-Designated Lineage: U.S. Nov 24 to Dec 7
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated December 23)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest "Estimated Variant Proportions by Common Name" (earlier in this thread), namely:
• Browns: JN.1.11 + FLuQE
• Reds: XEC
• Blues: JN.1.11 + FLiRT
• Greens: JN.1.1 + FLiRT
• Purples: JN.1.1 + FLiRT-KS
• Greys: Other
Reading clockwise from top:
0.2% - JN.1 (2 variants) [grey]
- Unlabeled sliver of light blue.
- Two unlabeled slices of blue.
22.8% - KP.3.1.1 / MC [brown]
7.2% - KP.3 (10 var'nts) [tan]
- Two unlabeled slivers of grey.
- Two unlabeled slices of green.
3.2% - LF.7 (6 variants) [green]
3.8% - LP.8.1 (1 variant) [blue]
- Unlabeled sliver of grey.
3.3% - MC.1 (2 variants) [brown]
3.2% - MC.10.1 (1 variant) [brown]
- Two unlabeled slices of brown.
7.7% - other MC (18 variants) [brown]
- Unlabeled slices of grey, green, and grey.
2.9% - XEC.2 (1 variant) [red]
30.0% - XEC (5 variants) [red]
- Unlabeled slice of blue.
3.4% - XEL (1 variant) [grey]
- Unlabeled slice of grey.](https://spaces.hcommons.social/media_attachments/files/113/711/595/302/315/529/original/8a3601c897025046.png "Chart: Variants by Pango-Designated Lineage: U.S. Nov 24 to Dec 7
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated December 23)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest \"Estimated Variant Proportions by Common Name\" (earlier in this thread), namely:
• Browns: JN.1.11 + FLuQE
• Reds: XEC
• Blues: JN.1.11 + FLiRT
• Greens: JN.1.1 + FLiRT
• Purples: JN.1.1 + FLiRT-KS
• Greys: Other
Reading clockwise from top:
0.2% - JN.1 (2 variants) [grey]
- Unlabeled sliver of light blue.
- Two unlabeled slices of blue.
22.8% - KP.3.1.1 / MC [brown]
7.2% - KP.3 (10 var'nts) [tan]
- Two unlabeled slivers of grey.
- Two unlabeled slices of green.
3.2% - LF.7 (6 variants) [green]
3.8% - LP.8.1 (1 variant) [blue]
- Unlabeled sliver of grey.
3.3% - MC.1 (2 variants) [brown]
3.2% - MC.10.1 (1 variant) [brown]
- Two unlabeled slices of brown.
7.7% - other MC (18 variants) [brown]
- Unlabeled slices of grey, green, and grey.
2.9% - XEC.2 (1 variant) [red]
30.0% - XEC (5 variants) [red]
- Unlabeled slice of blue.
3.4% - XEL (1 variant) [grey]
- Unlabeled slice of grey.")
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
A reskin of CDC's Variants Nowcast, emphasizing significant variants, incl. those in GISAID yet not broken out by CDC.
Five rectangular tree-charts, side by side, for fortnights through December 8–11. Legend organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all JN.1. XEC accounts for near half total, with JN.1.11 + FLuQE a bit more than a third.
For week of 11/24–12/7, packed bubble charts fill many single-variant tiles, indicating diversification of those variants—per GISAID—that wouldn't otherwise be apparent given CDC's choices of what to break out or not.
Legend:
XEC [red]:
45% - XEC.2† and other XEC
JN.1.11 + FLuQE [browns]:
9% - MC.1, MC.10.1, MC.19
2% - KP.3
24% - other KP.3.1.1 / MC
JN.1.11 + FLiRT [blues]:
8% - LP.8.1
4% - XEK, KP.2.3, FDA-Vaccine-Target KP.2, KP.4.1 & KP.2.15
¼% - LP.1 & other KP.1.1.3 / LP
0% - other KP.1.1
JN.1 + FLiRT [green]:
7% - LF.7, LB.1.3.1 / NL, LB.1, JN.1.18.6 / LY, LF.3.1 & JN.1.16.1 / LF
JN.1 + FLiRT-KS [purple]:
⅒% - other KS.1
Other [greys]:
¼% - JN.1.16, JN.1.18, XEL† & four tracked variants at <⅒%
0% - HV.1
⅓% - other WHO-Vaccine-Target JN.1
0% - other Omicron-2 BA.2
0% - other Omicron B.1.1.529 / BA
⅜% - Other (not specified)](https://spaces.hcommons.social/media_attachments/files/113/711/214/282/560/700/original/ab4c26a8a627dc34.jpg "Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
A reskin of CDC's Variants Nowcast, emphasizing significant variants, incl. those in GISAID yet not broken out by CDC.
Five rectangular tree-charts, side by side, for fortnights through December 8–11. Legend organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all JN.1. XEC accounts for near half total, with JN.1.11 + FLuQE a bit more than a third.
For week of 11/24–12/7, packed bubble charts fill many single-variant tiles, indicating diversification of those variants—per GISAID—that wouldn't otherwise be apparent given CDC's choices of what to break out or not.
Legend:
XEC [red]:
45% - XEC.2† and other XEC
JN.1.11 + FLuQE [browns]:
9% - MC.1, MC.10.1, MC.19
2% - KP.3
24% - other KP.3.1.1 / MC
JN.1.11 + FLiRT [blues]:
8% - LP.8.1
4% - XEK, KP.2.3, FDA-Vaccine-Target KP.2, KP.4.1 & KP.2.15
¼% - LP.1 & other KP.1.1.3 / LP
0% - other KP.1.1
JN.1 + FLiRT [green]:
7% - LF.7, LB.1.3.1 / NL, LB.1, JN.1.18.6 / LY, LF.3.1 & JN.1.16.1 / LF
JN.1 + FLiRT-KS [purple]:
⅒% - other KS.1
Other [greys]:
¼% - JN.1.16, JN.1.18, XEL† & four tracked variants at <⅒%
0% - HV.1
⅓% - other WHO-Vaccine-Target JN.1
0% - other Omicron-2 BA.2
0% - other Omicron B.1.1.529 / BA
⅜% - Other (not specified)")