Victoria Stuart 🇨🇦 🏳️⚧️<p>GREmLN: A Cellular Regulatory Network-Aware Transcriptomics Foundation Model<br><a href="https://www.biorxiv.org/content/10.1101/2025.07.03.663009v1?rss=1" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">25.07.03.663009v1?rss=1</span></a></p><p>Comments<br>* really brilliant work: LLM + neural transformer architecture<br>* a molecular biologist, I long-thought (no time to learn / program) flux-based analysis / ODE models<br>* this type of modeling is foundational to in silico modeling<br>* huge proponent of graphs - add LLM, attention heads - brilliant! 😀 👍️ kudos</p><p><a href="https://mastodon.social/tags/BiologicalModeling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BiologicalModeling</span></a> <a href="https://mastodon.social/tags/FoundationModels" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FoundationModels</span></a> <a href="https://mastodon.social/tags/LLM" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LLM</span></a> <a href="https://mastodon.social/tags/attention" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>attention</span></a> <a href="https://mastodon.social/tags/GraphTheory" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GraphTheory</span></a> <a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>